Keyword Analysis & Research: hi c scaffolding

biomedcentral.com

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-021-04453-5

In this paper, we proposed a new Hi-C scaffolding method for generating chromosome-scale scaffolds through iterative weighted linking, it uses N-best neighbor strategy to resolve non-reciprocal best neighbor issue and exploit all possible links, and a robust method to discover misjoins in … See more

DA: 40 PA: 24 MOZ Rank: 18

nature.com

https://www.nature.com/articles/s41477-019-0487-8

WebAug 5, 2019 · High-throughput chromosome conformation capture (Hi-C) technology serves as a robust tool to dramatically advance chromosome scaffolding; however, … Author: Xingtan Zhang, Shengcheng Zhang, Qian Zhao, Ray Ming, Ray Ming, Haibao Tang Publish Year: 2019

Author: Xingtan Zhang, Shengcheng Zhang, Qian Zhao, Ray Ming, Ray Ming, Haibao Tang

Publish Year: 2019

DA: 97 PA: 8 MOZ Rank: 12

oup.com

https://academic.oup.com/bioinformatics/article/39/1/btac808/6917071

WebDec 16, 2022 · YaHS follows a standard framework of Hi-C scaffolding pipelines: map Hi-C reads to input contigs, break contigs where necessary to correct assembly errors, build a …

DA: 70 PA: 97 MOZ Rank: 74

wiley.com

https://onlinelibrary.wiley.com/doi/10.1111/mec.16146

WebPerforming genomic scaffolding using Hi-C data is highly resource-demanding and employs elaborate laboratory steps for sample preparation. It starts with building a …

DA: 18 PA: 32 MOZ Rank: 82

biorxiv.org

https://www.biorxiv.org/content/10.1101/2022.04.20.488415v1

WebApr 20, 2022 · Recent advances in chromatin conformation capture (Hi-C) have provided a new approach to scaffolding genome assemblies, and the last ten years have seen a …

DA: 91 PA: 80 MOZ Rank: 9

biomedcentral.com

https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-021-04453-5

DA: 61 PA: 1 MOZ Rank: 42

nih.gov

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9292758/

WebSep 12, 2021 · Performing genomic scaffolding using Hi‐C data is highly resource‐demanding and employs elaborate laboratory steps for sample preparation. It …

DA: 27 PA: 65 MOZ Rank: 1

nih.gov

https://pubmed.ncbi.nlm.nih.gov/34837944/

WebNov 27, 2021 · Results: We design and develop a novel Hi-C based scaffolding tool, pin_hic, which takes advantage of contact information from Hi-C reads to construct a …

DA: 63 PA: 26 MOZ Rank: 48